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• SMB Digest Vol 8, Issue 1 - January 9, 2008
• SMB Digest Vol 8, Issue 2 - January 15, 2008
• SMB Digest Vol 8, Issue 3 - January 22, 2008
• SMB Digest Vol 8, Issue 4 - January 30, 2008
• SMB Digest Vol 8, Issue 5 - February 4, 2008
• SMB Digest Vol 8, Issue 6 - February 11, 2008
• SMB Digest Vol 8, Issue 7 - February 18, 2008
• SMB Digest Vol 8, Issue 8 - February 25, 2008
• SMB Digest Vol 8, Issue 9 - March 3, 2008
• SMB Digest Vol 8, Issue 10 - March 10, 2008
• SMB Digest Vol 8, Issue 12 - March 20, 2008
• SMB Digest Vol 8, Issue 13 - March 31, 2008
• SMB Digest Vol 8, Issue 14 - April 8, 2008

• MSc/PhD/Post-Doctoral Trainees: Computational Immunology, Bar-Ilan SMB Digest Vol 8, Issue 14 - April 8, 2008
  The Computational Immunology Lab of Prof. Ramit Mehr, Bar-Ilan University, Israel, (http://repertoire.os.biu.ac.il/) needs Research Students (for the MSc or PhD degrees) and Post-Doctoral Trainees for several fascinating projects More info: http://repertoire.os.biu.ac.il/Info-4-candidates.htm If you are interested: Please send email to mehrra@mail.biu.ac.il, stating the position you are interested in, and attach: * Your CV, * Any publications or reports you have from your previous research projects, * Your grades in your previous studies (full lists), * A statement of your research interests, career goals and plans, * Names of people who will be willing to recommend you . e.g., advisors from previous studies, projects or jobs (please give names + phone numbers and/or email addresses of these persons).
• PhD Position: Mathematical Biology, University of Strathclyde SMB Digest Vol 8, Issue 13 - March 31, 2008
  We have been awarded a PhD studentship to study Mathematical Modelling of the spread of Hepatitis C amongst Injecting Drug Users in Scotland. Supervisors: Dr. David Greenhalgh (Department of Statistics and Modelling Science (STAMS), University of Strathclyde, Glasgow, UK) and Dr. Sharon Hutchinson (Health Protection Scotland (HPS)). Project aim: The project aims to develop mathematical models for the spread of hepatitis C virus (HCV) amongst injecting drug users (IDUs). The models will use differential equations in the first instance. Such models have been usefully employed to inform public health policy to control the spread of Human Immunodeficiency Virus (HIV) amongst injecting drug users (IDUs) in the USA and foot-and-mouth disease in the UK. Models for the spread of HIV amongst IDUs will be adapted to HCV. Equilibrium and stability analyses will be performed on the models and key epidemiological parameters calculated such as the basic reproduction number R_0. We will concentrate on designing models to examine the effect of HCV prevention measures, such as the provision of needles/syringes and other injecting equipment, methadone treatment and educational interventions. Heterogeneity in injecting risk behaviours among IDUs will be explored in the model. If time permits we would also explore individual-based stochastic Monte-Carlo simulation models to compare the results with the deterministic models and the effect of friendship networks and geographical dispersion on the spread of HCV. A very important part of this project is the link with HPS and we would use epidemiological data on HCV from HPS to estimate the parameters in our models as well as guidance from HPS staff (particularly Dr. Hutchinson and Professor Goldberg) in the model formulation. We would also aim to link in with the detailed numerical computer simulation models of the spread of HCV used by Dr. Hutchinson and colleagues. Stipend: This studentship is funded by EPSRC/HPS at standard EPSRC rates (£12,923 p.a. for 2008/9), plus home fees. The preferred start date is 1st October 2008, but other start dates may be possible. Eligibility: This studentship is suitable for UK or EU-eligible students (fees and stipend) or other EU students (fees only) with a good or expected good (2i or above or equivalent) Honours degree in Mathematics, Statistics or other numerate subject (Physics, other numerate subjects considered). International students are not eligible. Further Information: For further information about this project and an application form please contact Dr. David Greenhalgh, Department of Statistics and Modelling Science, University of Strathclyde, Livingstone Tower, 26 Richmond Street, Glasgow G1 1XH, Scotland, UK, Tel: +44-141-552-4400 Ext 3653, Fax +44-141-552-2079, email:-david@stams.strath.ac.uk
• PhD Position: Reduction ... Models of Biochemical Networks, INRIA SMB Digest Vol 8, Issue 13 - March 31, 2008
  INRIA Grenoble-Rhône-Alpes is seeking a PhD student to work on Methods for the reduction of large and complex models of biochemical networks A description of the subject of the PhD project, as well as conditions for applicants, can be found on the INRIA web site: http://www.inrialpes.fr/jsp/fiche_actualite.jsp?CODE=1204618110974&LANGUE=1&STNAV=&RUBNAV=&RH=ACCUEIL The application dead-line is May 15, 2008. All further information can be obtained from Daniel Kahn, INRIA Grenoble-Rhône-Alpes and Laboratory of Biometry and Evolutionary Biology, CNRS/University of Lyon (Daniel.Kahn@inria.fr) or Hidde de Jong, INRIA Grenoble-Rhône-Alpes (Hidde.de-Jong@inria.fr)
• PhD Position: Evolutionary Dynamics, Simula Research Laboratory SMB Digest Vol 8, Issue 13 - March 31, 2008
  Simula Research Laboratory conducts basic research in the fields of communication technology, software engineering and scientific computing. The research in the Scientific Computing (SC) department is focused on the development of numerical methods, algorithms and software, and large scale biomedical and systems biology oriented simulation studies applying these methods. In recent years, the main application area for computational research studies has been the simulation of the electrical and mechanical activity of the heart. Currently, we plan to extend our computational research to simulations of the evolutionary dynamics of genetic networks controlling the properties of organisms. The aim of the research project is to study key evolutionary processes such as the adaptation of organisms to their environment, the splitting up of a species into multiple species and the development of multicellular organisms from a single fertilized cells. A key aspect of the research will be to study how the architecture and dynamics of genome organization and gene regulatory network structure influence the properties of organisms and hence how they influence the above mentioned evolutionary processes and how this contrasts with findings from more classical population genetics models. Our understanding of genome organization and gene regulatory networks has changed dramatically over the last decade. A large part of DNA that was previously considered junk turns out the be functional after all, coding for RNAs that are however not translated into proteins. These RNAs in turn are often involved in regulating the expression of genes, which were previously thought to be exclusively regulated by proteins. Incorporating these new insights into our models is another key aspect of the research project. Modeling formalisms used will typically be discrete, individual- based, event-based, and often spatially extended and will involve the explicit modeling of the evolution of genes, genomes and gene regulatory networks determining the properties of simulated agents. The project will be supervised by a new member of our research group, Dr. Kirsten ten Tusscher (http:// www-binf.bio.uu.nl/khwjtuss/). Simula offers excellent opportunities for doing high quality research, generous support for travels and equipment, and competitive salary (around 47.000,- Euro/69.000,- USD for a Ph.D. position) We are looking for candidates who fulfill one or more of the following requirements: a strong interest in evolutionary biological research a University degree in computational biology, systems biology, biomedical engineering, artificial life, artificial intelligence, computer science, physics or applied mathematics experience with computational modeling, simulation and analysis of complex (biological) systems. The position requires excellent English writing skills and high marks from the BSc and MSc degree. Women are encouraged to apply. For more information contact Joakim Sundnes (sundnes@simula.no) or Kirsten ten Tusscher(tentussc@simula.no). To apply, email a short application letter, curriculum vitae, copies of transcripts and grades, and a publication list to jobs@simula.no. The subject of the email must contain 0830 Scientific Computing. Application deadline: May 16, 2008
• PhD Programmes: IGC, Lisbon SMB Digest Vol 8, Issue 12 - March 20, 2008
  Applications are now open for the 2008 academic year PhD programmes at the Instituto Gulbenkian de Ciencia, in Lisbon, Portugal. The IGC is once again hosting 3 international PhD programmes: Gulbenkian/Champalimaud PhD Programme in Neuroscience http://pd2008.igc.gulbenkian.pt/pgcn/ PhD Programme in Computational Biology http://pd2008.igc.gulbenkian.pt/pdbc/ IGC International PhD Programme in Multidisciplinary Life Sciences http://pd2008.igc.gulbenkian.pt/pgd/ Information on the programmes and application procedures are available at www.igc.gulbenkian.pt. The deadline for applications is 4 April 2008.
• Fully-funded PhD Studentships: University of Leicester, UK SMB Digest Vol 8, Issue 12 - March 20, 2008
  Up to four fully-funded PhD studentships are available in the Department of Mathematics of the University of Leicester, UK. Although the range of the research topics across the department is rather broad, for at least one of the positions a preference may be given for a research related to mathematical biology. Applications are welcome as soon as possible, ideally by April 15th, but later applications may also be considered. For more details about the positions, please visit http://www.jobs.ac.uk/jobs/DF062/EPSRC_PhD_Studentships/ Informal requests can also be sent to Dr. Sergei Petrovskii at sp237@le.ac.uk
• PhD Student: Cell-based Modeling Plant Development, VIB, Ghent SMB Digest Vol 8, Issue 12 - March 20, 2008
  The research group Plant Systems Modeling of the Department Plant Systems Biology at the VIB in Ghent, Belgium, has an opening for a Ph. D student (f/m) Computational modeling of phytohormone cross-talk during lateral root initiation The VIB Department Plant Systems Biology in Ghent, Belgium has an opening for an ambitious and energetic research assistant in the research group Plant Systems Modeling, which focuses on computational modeling of plant development. Computer modeling is a crucial pillar in systems biology, a relatively new approach in biology that shifts focus from individual molecules, genes and cells to their dynamic interplay: how do molecules, genes and cells form a working mechanism, behaving in a predictable way? Modeling the biological system in a computer simulation gives us insights into developmental mechanisms that suggest new experiments, which our experimental collaborators test in the wet-lab. What will be your task? You will be building and analyzing dynamical models of auxin transport and its cross-talk with other phytohormones including cytokynin, during lateral root initiation. The work will be carried out in close collaboration with the institute's experimental labs of Dr. Tom Beeckman, Dr. Eva Benková, and Prof. Dr. Jirí Friml. Lateral roots originate from cells in the root basal meristem, a proliferating tissue region just above the root tip, forming a regular branching pattern with evenly spaced lateral roots. The crucial signal for initiating the lateral root is most likely the phytohormone auxin. Auxin levels oscillate at a period of around 15 hours, precisely coinciding with the rhythm by which new lateral roots appear. Our modeling project aims at unraveling the mechanisms behind these oscillating auxin flows, which may be driven by a dynamic interaction between auxin, the production and cellular localization of its transporter proteins, and additional phytohormones that modulate the transporter proteins' localization. In the second part of your project you will also include root growth and the tightly orchestrated cell divisions following lateral root initiation. Your background For this challenging Ph.D dissertation project we are looking for an MSc in mathematical or theoretical biology, or an MSc in physics, applied mathematics or computer science with interest and affinity for biology. Programming experience (C++) and experience in biological modeling are a big plus. What do we offer you? This project gives the opportunity to get a PhD in systems biology, in an energetic, international, multi-disciplinary centre of excellence for plant systems biology. We have funding for four years, but we encourage you to apply for external funds. Interested? Have a look at our website, www.psb.ugent.be, and send your cv and motivated letter of application to: Dr. Roeland Merks / Plant Systems Modeling group Department Plant Systems Biology, VIB and Molecular Genetics, Ghent University Technologiepark 927, 9052 Gent, Belgium Tel: +32 09 33 13823, email: roeland.merks@psb.ugent.be
• PhD Studentships: Infectious Disease Modelling SMB Digest Vol 8, Issue 10 - March 10, 2008
  Modelling and Economics Unit, Health Protection Agency Centre for Infections. Applications are invited for three PhD studentships in infectious disease modelling, tenable from September 2008. The studentships will be based jointly between the Modelling and Economics Unit, in the Health Protection Agency (HPA) Centre for Infections in North London and the London School of Hygiene & Tropical Medicine or the University of Strathclyde. As such the successful candidate will benefit from exposure to a stimulating and dynamic modelling group, access to rich national datasets and relevant post-graduate courses. The following research projects are available: Modelling the transmission of HIV in men who have sex with men in the UK http://www.lshtm.ac.uk/prospectus/howto/HPA_studentships.html Using mathematical modelling to estimate the extent of ongoing M tuberculosis transmission in the UK http://www.lshtm.ac.uk/prospectus/howto/HPA_studentships.html Developing serotype-specific models of the transmission of pneumococcal carriage and the effect of pneumococcal conjugate vaccines on disease in the UK http://www.stams.strath.ac.uk/vacancies/student/Pneumo_PhD_project_description.pdf Applicants should possess a bachelors (2i or above) and (preferably) a masters degree in mathematics, science or other discipline with a strong analytical component, which is relevant to mathematical modelling of infectious diseases. Experience of computer programming is desirable. The studentship will cover EU tuition fees, together with a stipend of £15,080 (MRC rate) for three years. The application procedure depends on the studentship - follow the links for the corresponding studentship for further details. Any enquiries should be sent to: Ms Saila Shah (email: saila.shah@hpa.org.uk) The closing date for applications is 4th April 2008, with interviews during the week beginning 14th April, or as soon as possible thereafter.
• Positions: Computational Neuroscience, CNCR, Amsterdam SMB Digest Vol 8, Issue 10 - March 10, 2008
  Applications are invited for two research positions in the Neuroinformatics Group of the Center for Neurogenomics and Cognitive Research (CNCR), VU University Amsterdam. The positions are funded by a EU-FP7 grant for the Collaborative Large-scale Integrating Project Self-Constructing Computing Systems (SECO). Using a combined computational and experimental approach, the SECO project investigates the principles by which populations of real or artificial neurons can grow and assemble themselves into functioning circuits. The first 4-year project, for a postdoctoral researcher, is on the development of dendritic and axonal growth models. The aim is to create models for neuronal morphogenesis in which cells develop through growth cone migration and branching, and formation of synaptic connections in interaction with their environment. A major challenge is to find a balanced level of description of neuronal outgrowth based on local mechanisms and interactions in space and time that will be suitable for an algorithmic implementation. The models will be used to study the development of cortical and thalamic circuitry. The ideal candidate should combine a strong neurobiological interest and knowledge with a solid background in neuro-biophysics and extensive experience in computational modeling and computer programming. The second 4 (or 3)-year project, for a PhD student (or postdoctoral researcher), focuses on the reciprocal interactions between neuronal network structure and activity dynamics in developing neural circuits. Using computational models, we will explore the impact of activity-dependent plasticity rules on the evolution of developing neuronal networks under their own (spontaneous) firing activity. The research will be guided by the hypothesis that networks will evolve towards self-consistent states, in which firing patterns stabilizes the synaptic connectivity structure that also gives rise to these firing patterns. The ideal candidate should combine a strong neurobiological interest and knowledge with an excellent background in computational neuroscience and neuronal network research. Candidates of both projects will contribute significantly to the collaborative effort of the SECO consortium. For further information about these positions, please contact Dr. Arjen van Ooyen, arjen.van.ooyen@cncr.vu.nl, or Dr. Jaap van Pelt, jaap.van.pelt@cncr.vu.nl. Application letters including a CV, research experience, a short statement of research interests, and contact details of two referees should be sent by email to Dr. Arjen van Ooyen before the 1st of April 2008.
• PhD Studentship: Plant Systems Biology, Imperial College London SMB Digest Vol 8, Issue 9 - March 3, 2008
  A PhD position in systems biology of plants is available at Imperial College, London from 1st October 2008. The position is funded by a joint Microsoft Research/BBSRC Dorothy Hodgkin Postgraduate Award, and will be jointly supervised by Dr Radhika Desikan (Biology) and Professor Jaroslav Stark (Mathematics/CISBIC). The award, for a total amount of £90,000 will cover tuition fees and living expenses. The project aims to build a mathematical model of the integrated signalling networks in plant cells called stomatal guard cells. These cells regulate water and gas exchange between the plant and the environment. Modelling of the signal integration processes is essential in order to understand better how plants may be able to survive adverse conditions, such as those caused by global warming. The project will develop a dynamical model to fit the existing data. The model will in turn inform the choice of further biological experiments, and their outcome will enable more complex modelling. Deterministic methods from linear and non-linear differential equations will be employed (such as bifurcation analysis) as well as stochastic differential equations. A student with mathematics/computer science/computational biology background (with grades equivalent to a UK first class honours degree) of a nationality from those countries eligible for the DHPA (see www.rcuk.ac.uk/hodgkin/ ) will be eligible. The student will interact with both biologists (in RD's lab) and mathematical modellers (in JS group/CISBIC) in order to further this project. For further details contact Dr Radhika Desikan (r.desikan@ic.ac.uk) or Professor Jaroslav Stark (j.stark@ic.ac.uk). Closing date for applications is 30th April 2008. A PDF of this advertisement can be found at http://www.ma.ic.ac.uk/~jstark/PDF/MSR%20Plant%20PhD.pdf
• Graduate Positions: Theoretical Biology, Royal Holloway, U London SMB Digest Vol 8, Issue 9 - March 3, 2008
  The following 2 PhD studentships in theoretical biology are currently advertised in my group: Project 1: The evolution of pseudogamy and the emergence of diversity and altruism. Project 2: Lymphocyte homeostasis in man; measurement and modelling of thymic versus peripheral generation of nave lymphocytes in the maintenance of normal T-cell pools. Description project 1: The evolution of pseudogamy and the emergence of diversity and altruism. Main supervisor: Prof. Vincent Jansen, co-supervisor: Dr Ian Barnes This PhD Studentship aims to investigate how diversity of and altruism emerge using mathematical modelling and simulation studies. The research will be inspired by the evolution of pseudogamy. Pseudogamy is a form of reproduction where the males do not contribute genetic material to the next generation, despite the fact that the females can only reproduce if they have mated. This studentship is suitable for candidates with a degree(UK 2.1 degree or higher or equivalent thereof) in biology and proven skills in mathematical modelling/computer programming or for applicants with a degree in a quantitative subject (e.g. physics, mathematical or computer science) and an affinity for biology. The studentship will cover fees at UK-EU level and a maintenance stipend of approximately 14,000 per annum for 3 years. We will not consider candidates from outside the EU unless the candidate has additional funding available. The selected candidate will start in or close to October 2008 will work in the research groups of J If you require further information on this studentship, see or http://www.rhul.ac.uk/Biological-Sciences/Vacancies/2008_Jansen.doc contact Vincent.jansen@rhul.ac.uk. The deadline for applications is 19 March 2008. The interviews are planned for the week of 21 April 2008. To apply, use the form on http://www.rhul.ac.uk/Biological-Sciences/Vacancies/2008_PhDapplicationForm.pdf or generate your own form using http://www.rhul.ac.uk/Registry/Admissions/applyonline.html. Please send the completed form, together with a recent CV, to Prof. Vincent Jansen, School of Biological Sciences, Royal Holloway, University of London, Egham, Surrey TW20 0EX by post or e-mail. If you use the online application, please make sure you send a copy of the application form by email to Vincent.jansen@rhul.ac.uk. Description project 2: Joint PhD Studentship with Royal Holloway - St Georges University of London Lymphocyte homeostasis in man; measurement and modelling of thymic versus peripheral generation of nave lymphocytes in the maintenance of normal T-cell pools. Lead Supervisor: Derek Macallan, Professor in Infectious Diseases and Medicine, Centre for Infection, St George's, University of London. Co-supervisor: Vincent Jansen, Professor of Mathematical Biology, School of Biological Sciences, Royal Holloway, University of London. Project Description Lymphocyte populations persist because dying cells are continually replaced, unless replacement fails, as in HIV infection, with devastating consequences. Within this context, some clonal populations must be retained long-term in order to confer "immunological memory". How this is achieved is poorly understood. This project seeks to extend our understanding of human lymphocyte physiology by combining in vivo measurements of lymphocyte kinetics in human studies in Dr Macallan's laboratory at St George's with theoretical modelling and in silico experiments in Dr Jansen's group at RHUL. We will specifically study the role of nave cells (defined by surface markers such as CD31) in regenerating peripheral nave populations and investigate the effect of ageing on this process. We will compare in vivo nave T-cell labelling data with data on rates of recent thymic emigration from the abundance of T-cell receptor rearrangement DNA excision circles (TREC). This combined approach will provide important new insights by r How to apply For further enquiries, see http://www.rhul.ac.uk/Biological-Sciences/Vacancies/2008_SWAN_Macallan&Jansen.doc contact Derek Macallan (macallan "at" sgul.ac.uk) or Vincent Jansen (Vincent.jansen "at" rhul.ac.uk). This project will provide fees at UK-EU level and a maintenance stipend. We are seeking candidates with a degree (UK 2.1 degree or higher (or equivalent)) in biology or biomedical sciences with either relevant laboratory skills of relevant mathematical/statistical/computer science skills. To apply please send a CV, an application form http://www.swlacademicnetwork.ac.uk/documents/PhDSWanApplicationform08.doc (which can be downloaded from http://www.swlacademicnetwork.ac.uk/PhDStudentships.html), plus two letters of reference, as well as the title and supervisors name to enquiries@swlacademicnetwork.ac.uk by 7th April 2008.
• PhD Fellowships & Postdoctoral Positions: CoSBi, Italy SMB Digest Vol 8, Issue 8 - February 25, 2008
  PhD fellowships and Postdoctoral positions are available at the Microsoft Research - University of Trento Centre for Computational and Systems Biology (http://www.cosbi.eu/) in Trento, Italy to conduct research in the following areas: - Modeling cell cycle regulation of yeast and mammalian cells; Modeling polarized cell growth; Cancer tissue modeling. Details at: http://www.cosbi.eu/Rpty_Activ_Dynmol.php Informal enquiries: Attila Csikasz-Nagy (csikasz at cosbi dot eu) - Evolution and dynamics of chemotaxis; Dynamics and structure of signaling pathways; Robustness against gene deletion. Details at: http://www.cosbi.eu/Rpty_Activ_Pathway.php To fill the advertised positions, we are looking for enthusiastic scientists, trained in biology, mathematics, physics, computer science, or closely related areas. Formal applications and general inquiries should be made through the web site of the Centre: http://www.cosbi.eu/Careers_Home.php
• Graduate Position: Math or EES, University of Maine SMB Digest Vol 8, Issue 7 - February 18, 2008
  The University of Maine in Orono currently has a two-year graduate assistantship position available for qualified applicants seeking graduate training leading to a master's degree (either an M.A. in Mathematics, or an M.S. in Ecology and Environmental Science), beginning in Fall 2008. The relevant area of research for the position is spatial population modeling in spatiotemporally structured heterogeneous environments. This includes mathematical and computational models of populations in dynamic heterogeneous habitats. Collaboration with faculty in the School of Biology and Ecology would also be a likely part of the position, as the models will be applied to the spread of agricultural crop pests and invasive species, such as maggot flies in commercial blueberry fields and invading Asian woodwasps. The position is part of the Spatial Population Ecological and Epidemiological Dynamics Lab group (SPEED Lab) of Dr. David Hiebeler (http://www.math.umaine.edu/faculty/hiebeler/speedlab.html). Potential applicants are strongly encouraged to contact Dr. Hiebeler prior to their application. Application materials should be submitted through the University's Graduate School (see http://www2.umaine.edu/graduate/article.php?id=63), and should indicate in the application that they wish to be considered for Dr. Hiebeler's SPEED Lab position. Applicants will be considered until the position is filled. This position is restricted to U.S. citizens and permanent residents. The University of Maine is an Equal Opportunity/Affirmative Action Employer.
• PhD-student Positions: Biomedical Data Processing, Leuven SMB Digest Vol 8, Issue 7 - February 18, 2008
  PhD-student Positions in Biomedical Data Processing at Katholieke Universiteit Leuven, Belgium Location: Department of Electrical Engineering, Division ESAT-SCD, research group BioMed, Katholieke Universiteit Leuven, Leuven, Belgium (http://www.esat.kuleuven.be/sista/members/biomed/) Research group. The BIOMED team within the ESAT-SCD division consists of 2 staff members, 3 postdocs, 17 PhD students. Research ^ fundamental/theoretical as well as application oriented -- is performed in the domain of (multi)linear algebra, (non)linear signal analysis, classification and system identification with special focus to the development of numerically reliable and robust algorithms for the extraction of clinically, biochemically or pharmaceutically relevant information (e.g. metabolite concentrations in the brain) out of low-quality multi-channel measurements in order to enable an improved medical diagnosis. In this domain the group has built up an international reputation. Applications under study are: quantification of metabolite concentrations using in-vivo Magnetic Resonance Spectroscopic (MRS) data and images, quantification of brain oxygenation and autoregulation in neonates using (functional) Near-Infrared Spectroscopy, quantification of cardiovascular dynamics and heart-rate variability analysis, event-related potential analysis using EEG, stress monitoring using EMG, detection and localization of epileptic seizures based on scalp-EEG monitoring, and preoperative classification and prognosis of (brain, ovarian, prostate) tumours. Three PhD positions. We seek one of more outstanding graduate students for the following multidisciplinary research projects: 1. EEG signal processing for non-invasive Brain-Computer interaction, possibly combined with multimodal registration of other relevant information (EMG/ECG/) and signal interpretation for motor recovery; 2. Descriptive and predictive models and advanced Statistical analysis for computer-aided diagnosis and prognosis of cancer and autism; 3. Integration of EEG and functional MR Imaging with applications in monitoring cognitive disorders in patients with MS and ADHD. The research is done in a multidisciplinary environment in strong collaboration with the appropriate divisions in the University Hospitals K.U.Leuven. All positions are immediately vacant. The PhD work will be supervised by Prof. Sabine Van Huffel. Profile: We are particularly seeking candidates with a Master-of-Science degree in biomedical, electrical, computer science or mathematical engineering, in bioengineering or in mathematics, and with strong interests in optimization, signal processing, statistics, numerical computations, and biomedical applications. The ability to become acquainted with new methods within short time and good familiarity with scientific tools like MATLAB programming and statistical analysis are appreciated. The chosen candidate will be an enthusiastic person and initiator with good communication skills and a good knowledge of English. Application: To apply, please send a CV and a cover letter before April 15, 2008 to Prof. Sabine Van Huffel (sabine.vanhuffel@esat.kuleuven.be) Information: The salary will be assigned according to the Belgian university salary system. The PhD-student appointment is for the duration of four years.
• MSc and PhD Studentships: Biomathematics, University of Guelph SMB Digest Vol 8, Issue 5 - February 4, 2008
  Applications are being accepted for MSc and PhD studentships in epidemic modelling and ecological modelling at the University of Guelph. Candidates should have background in mathematics or other quantitative fields, such as physics or computer science. Programming ability is desirable, as is previous coursework in biomathematical modelling. Guelph is a pleasant town of 100,000, situated only 1 hour from Toronto and its numerous universities and research hospitals. Interested candidates should send a letter of interest and a CV to: Professor Chris Bauch, Department of Mathematics and Statistics, University of Guelph, Email: cbauch@uoguelph.ca, Website: http://www.uoguelph.ca/~cbauch
• BBSRC Studentship: Maths & Biology Skills, Reading University SMB Digest Vol 8, Issue 5 - February 4, 2008
  Prof Richard Sibly of Reading University is seeking applicants for a BBSRC studentship that needs both mathematical and biological skills. Some information about the studentship can be found at http://www.findaphd.com/search/showproject.asp?projectid=15723&inst=READ-ESRT&searchtype=i&theorder=2&page=1 In practice the direction of the studentship will be open to the student's ideas, interests and suggestions. The deadline for applications is 15 February 2007. What is needed is a CV, a covering letter and contact details for two academic referees. The CV only need give details of education and gap year/holiday jobs if relevant. The covering letter should say why you are interested in the project and give details of what you are doing in your honours research job, and say what you want to do eventually. Here you need to say you want to be a research scientist or academic, so that the studenship is seen to provide training for your future career. It can be up to a page of A4, single line spaced. The referees should say you are likely to get a 2i or a first Any problems get in touch - I'm very happy to help.
• PhD Studentship: Mathematical Modelling, University of Glasgow SMB Digest Vol 8, Issue 5 - February 4, 2008
  PhD studentship to start in summer or autumn 2008: Mathematical modelling of ontogenic colour change in relation to predation pressure Supervisor: Prof. Graeme D Ruxton, University of Glasgow Funded by NERC (please check http://www.nerc.ac.uk/funding/available/postgrad/eligibility.asp for eligibility criteria) Many larval insects show dramatic ontogenic change in colouration: changing from a camouflaged appearance early in life (such as the early instar caterpillar on the left that is considered to mimic a bird dropping) to highly visible warning colouration later in life (see the photo on the right of a later instar of the same species). More generally, ontogenic change in coloration is widely reported across diverse taxa (e.g. fish, snakes, crustaceans as well as insects) and is often considered to be driven by changing predation pressure as the individual grows. There is currently no theoretical framework within which to interpret instances of ontogenic colour change (OCC). This studentship would aim to provide such a framework. Specifically, it would use stochastic dynamic state-dependent modelling techniques to provide a model that predicts under what ecological circumstances OCC would be expected, when during ontogeny such change is expected to occur, what the associated physiological or behaviour changes expected to occur with the OCC are and what the mechanisms underlying such changes are. This studentship will run in parallel with a programme of experimental work that will be useful in parameterising and testing the models produced. This project would suit either a student with a highly numerate background (e.g. applied maths, physics or computing science) interested in applying their skills to biology. Further details available on request from G.Ruxton@bio.gla.ac.uk
• Postdoc and PhD Positions: Mathematical Biology, Helsinki SMB Digest Vol 8, Issue 5 - February 4, 2008
  The Mathematical Biology Group at the Department of Biological and Environmental Sciences, University of Helsinki, Finland (leader Dr. Otso Ovaskainen) is seeking outstanding, highly motivated candidates to join research projects at the interface between mathematics and ecology and evolutionary biology. Successful candidates may have their training either in mathematics or in biology, the main criteria being the potential to perform top-quality research. We anticipate hiring up to 4 postdoctoral researchers or Ph.D. students over the next 3 years. Research projects will be developed in conjunction with the interests of the successful candidates, focused on the following areas: 1. The roles of space and stochasticity in population dynamics 2. Metacommunity dynamics of wood-decaying fungi 3. Animal movement in heterogeneous environments 4. Bayesian approaches in evolutionary quantitative genetics The PhD student positions are available for 4 years. The postdoc positions are for 1 year, with the possibility of a 2-year extension. The Mathematical Biology group is part of the Metapopulation Research Group (leader Prof. Ilkka Hanski), which is a Centre of Excellence in Research supported by the Academy of Finland. We offer an international research environment with excellent possibilities to cooperate with experts in mathematics, statistics, population biology, and evolutionary ecology. Salary and social benefits according to the University of Helsinki Salary system, around 2,300 Euro/month for PhD students and 3,100 Euro/month for post docs (the latter negotiable). Applications including a short CV (max 3 pages), list of publications, and the e-mail addresses of two researchers willing to write a letter of reference should be sent to otso.ovaskainen@helsinki.fi with cc to tuuli.ojala@helsinki.fi; write either "postdoc position" or " PhD student position" on the subject line. For more details on the research projects and on the application procedure, see http://www.helsinki.fi/science/metapop/MBG/positions/index.htm Deadline for applications 14th March 2008, starting date 1st May 2008 (negotiable).
• PhD Studentships (4): Systems Biology, University of Nottingham SMB Digest Vol 8, Issue 3 - January 22, 2008
  Four PhD studentships are available to mathematically trained applicants as part of a major programme in Systems Biology at the University of Nottingham. Each provides the opportunity to work on a multidisciplinary project developing mathematical models for an important area of biology, namely: (i) Modelling the effect of maternal diet on the development of diseases (such as diabetes and obesity) in adult life (informal enquiries to Professor Helen Byrne, helen.byrne@nottingham.ac.uk). (ii) Predictive modelling of the earliest events in vertebrate embryo development (informal enquiries to Professor John King, john.king@nottingham.ac.uk). (iii) Integrative modelling of angiogenesis and progesterone production in the ovary (informal enquiries to Dr Markus Owen, markus.owen@nottingham.ac.uk). (iv) From model to crop: modelling root development in cereals (informal enquiries to Professor John King, john.king@nottingham.ac.uk). Each project will be co-supervised by a mathematician and experimentalist and the successful applicants will be members of an extensive team working on a wide range of topics at the interface between mathematics and biology. Applicants should have a strong degree in mathematics or a related subject and a commitment to multidisciplinary research. The studentships are available from 1 October 2008 for a period of 4 years. Further information about the School of Mathematical Sciences is available at http://www.maths.nottingham.ac.uk/. Applications can be made on-line at: http://pgapps.nottingham.ac.uk/. Alternatively, application forms are available from the Postgraduate Admissions Secretary, School of Mathematical Sciences, The University of Nottingham, University Park, Nottingham, NG7 2RD. Tel: +44 (0)115 9514948. Fax: +44 (0)115 9514951. Email: pgmath@maths.nottingham.ac.uk. Students should state clearly that they wish to be considered for these studentships in the Personal Statement section of their application. Closing date: 1 March 2008
• PhD Position: Simulating Evolutionary Dynamics, Simula Research Lab SMB Digest Vol 8, Issue 1 - January 9, 2008
  Simula Research Laboratory conducts basic research in the fields of communication technology, software engineering and scientific computing. The research in the Scientific Computing (SC) department is focused on the development of numerical methods, algorithms and software, and large-scale biomedical and systems biology oriented simulation studies applying these methods. Currently, we plan to extend our biologically inspired research to simulation studies of evolutionary dynamics of genetic networks and their role in species adaptation, formation and development. For this project we seek a candidate for an available PhD position (3 years). The position will be supervised by a new member of our research group; Dr Kirsten ten Tusscher. In the current, post-genomic era, it has become increasingly clear that to understand the functioning of biological cells, tissues, organisms and populations it is not enough to know which genes or proteins they possess. In addition, one also needs to understand how these genes and proteins interact dynamically in complex networks and how these interactions have arisen during evolution. As an illustration, after the human genome was sequenced, people were surprised by the relatively small number of genes found in humans. Based on gene numbers in simpler organisms a much larger number was expected. It is now becoming clear that our larger complexity relative to single celled and simple multicellular organisms resides not so much in the number of genes we have but in the way these genes interact in complex networks. In the current research we will study the role of genetic networks in several key biological evolutionary processes: the adaptation of species to their (changing) environment, the splitting of a species into multiple species, and the development of multicellular organisms. Simula offers excellent opportunities for doing high quality research, generous support for travels and equipment, and competitive salary (around 47.000,- Euro/69.000,- USD for a Ph.D. position and 58.000,- Euro/84.500,- USD for a Postdoc position). We are looking for candidates with a strong interest in biological and evolutionary oriented research and a University degree in physics, applied mathematics, computer science, artificial intelligence, biomedical engineering, or computational biology. The position requires excellent English writing skills and high marks from the BSc and MSc degree. Women are encouraged to apply. For more information visit http://www.simula.no/jobs, or contact Kirsten ten Tusscher (tentussc@simula.no) or Joakim Sundnes (sundnes@simula.no). To apply for these positions, email a short application letter and curriculum vitae with publication list to jobs@simula.no. The subject of the email must contain 0820 Scientific Computing. Application deadline: February 15, 2008

  Postdoc Positions

  • Postdoctoral Position: Mathematical Biology, UBC SMB Digest Vol 8, Issue 14 - April 8, 2008
    Postdoctoral position for 2008-09 http://www.math.ubc.ca/~keshet/MathBioAd.html Modelling actin-based cell motility and its biochemical regulation Vancouver, British Columbia A PDF position has reopened in the Mathematical Biology group at UBC. We are still seeking an excellent candidate for this job. Job description (1) Modelling the cytoskeleton, cell motility, and signal transduction: The research focuses on the regulation of the actin cytoskeleton and implications for cell polarity and motility. Incoming post-doctoral fellows are sought from either experimental cell biology background (with strong interest in quantitative methods and modelling) or mathematical/biophysics background. Applications are also welcomed from candidates with strong computational skills (e.g. finite element, immersed boundary) wishing to enter this area. Setting The Math-Biology group at UBC presents many opportunities to work on a variety of exciting research (including, but not limited to theoretical immunology, neurophysiology, epidemiology, ecology and evolution) and to collaborate with other researchers. PDFs are encouraged to explore a variety of interests within this setting. In future, teaching in the Dept of Mathematics could be arranged, subject to interest and approval by the Department. Preference will be given to candidates with track record in quantitative research with good communication skills, and with ability to work well both independently and in a team. Please send the following material: (1) CV including a list of publications, preprints, reprints (2) statement of research interests (3) names, addresses, email addresses, of three people who could provide letters of reference on your behalf L. Edelstein-Keshet, Dept of Mathematics, UBC, keshet@math.ubc.ca
  • Research Fellowship: Mathematical / Computational Ecology, Belfast SMB Digest Vol 8, Issue 14 - April 8, 2008
    Beaufort Marine Research Fellowship. Applications are invited for this prestigious 7-year Fellowship in mathematical / computational ecology in support of the Ecosystem Approach to Fisheries Management. Based in Belfast, the position will be instrumental in building and evaluating multi-species size-spectrum models of specific sea areas. Much of the planned work will be highly innovative and often mathematically or computationally challenging. The Research Fellow will work closely with colleagues and research students in the Danish (see http://www.dfu.dtu.dk/English/Commercial_fisheries/Marine_ecosystems.aspx) and Irish (see http://www.marine.ie/home/services/operational/fishstock/Ecosystems.htm) Marine Institutes (some time may be spent in those countries). The project is led by Dr Keith Farnsworth (see http://www.qub.ac.uk/schools/SchoolofBiologicalSciences/Staff/DrKDFarnsworth/) at Queen's University Belfast. We are looking for someone with at least 3 years recent relevant research experience and competence with systems of PDEs and stochastic differential equations; expertise in at least one of: Mathematica, Matlab, or R (or one of its relatives) and experience with Unix. Experience of grid or parallel computing will be an advantage as well. Further information can be obtained from the School of Biological Sciences, Queen's University Belfast (sobb.office@qub.ac.uk). For application and further particulars see http://www.qub.ac.uk/sites/QUBJobVacancies/ResearchJobs/ . Salary Scale: £27,466 - £35837 (including contribution points) Closing Date: 4.00 pm on Friday 25th April 2008. It is anticipated that interviews for the position will be held on 15th May 2008. Beaufort Marine Research Awards grant-aided by the Irish Government under the National Development Plan 2007-2013 (NDP).
  • Post Doctoral Associate in Mathematical Biology
    Applications are invited for a postdoctoral fellowship in mathematical biology at the University of Miami. The position, funded in part by a grant from the Howard Hughes Medical Institute, is set to begin in the Fall of 2008 and is for two years. The primary responsibility of the fellow in the fall of each year will be to develop an upper level undergraduate course in mathematical biology suitable for a combined audience of mathematics and biology students that the fellow will teach in the spring semester. The fellow is also expected to conduct research at the interface of mathematics and biology in conjunction with University of Miami faculty. Position #036663. Currently the University of Miami has faculty with research interests in ecology, population dynamics, epidemiology, and bioeconomics. In addition, the University is also home to the Abess Center for Ecosystem Science and Policy and to the newly established Institute for Theoretical and Mathematical Ecology. Applicants should have received a Ph.D. in the mathematical sciences and should have demonstrated interest in research at the interface of mathematics and biology. We offer a competitive salary plus benefits. Review of applications will commence May 1, 2008 and will continue until the position has been filled. Please send a letter of application, professional resume, teaching philosophy and contact information for 3 references to: Professor Stephen Cantrell Chairman of Hiring Committee P.O. Box 249085 Coral Gables, Florida 33124-4250.
  • Postdoctoral Position: Computational Physiology, U Kentucky SMB Digest Vol 8, Issue 13 - March 31, 2008
    A postdoctoral position in computational physiology is available in the Center for Biomedical Engineering at the University of Kentucky. This NIH-funded research project involves: (i) development of signal processing methods to detect arousals and other transient events in EEG signals, and; (ii) mathematical modeling of oxygen delivery to the brain in healthy elderly subjects and in patients with sleep-disordered breathing. Candidates should have training in stochastic signal processing (e. g., spectral analysis, entropy, time-frequency analysis) and experience using simulation software for solving time-dependent differential equations. Basic knowledge of respiratory physiology and neurophysiology is necessary. The ideal candidate will be enthusiastic about participating in both aspects of the project. Additional information about the laboratory may be found at http://www.uky.edu/~ebruce/. Applications may be sent by email to ebruce@uky.edu. Candidates should submit the following (PDF attachments preferred): (1) current C. V.; (2) contact information for 3 references. Eugene N. Bruce, Ph. D. Professor, Center for Biomedical Engineering University of Kentucky, Lexington, KY 40506-0070
  • Postdoc: Ecological Epidemiology, University of Gothenburg SMB Digest Vol 8, Issue 12 - March 20, 2008
    Post-doc position in epidemiology; dynamics of infectious disease in metapopulations, Ref.nr E36 1191/08 at Department of Marine Ecology, University of Gothenburg. (Deadline for applications 15 April 2008.) A post-doc position, funded by the Swedish Research Council, on the epidemiology of infectious wildlife diseases is available. The job includes literature surveys, data analysis, and the development of theoretical models. The aim of the program is to develop new empirically based mathematical models that incorporate explicitly several aspects of animal population ecology that are often ignored. Central questions include how spatial structure and seasonal behaviour influence disease dynamics. A comparative approach will be used with diseases particularly in focus being seal plague (Phocine distemper virus) in harbour seal and the bubonic plague in rodents. The candidate should have a biological, mathematical or medical degree with experience in a relevant sub-discipline (for example, mathematical epidemiology, zoonotic disease ecology or the population biology of wildlife disease). It is also important that the candidate has experience in statistics and modelling and is proficient at writing scientific texts. The work will be carried out in collaboration with Dr. Karin Harding (Dep. Marine Ecology, GU) and Prof. Bernt Wennberg (Mathematical Sciences, Chalmers GU). International collaborators on the program are Prof. Mike Begon (Liverpool U.) and Prof Nils Cristian Stenseth (Oslo U). The position is for 18 months. The successful candidate will be based at the Dep. of Marine Ecology in Gothenburg and will be encouraged to participate in joint workshops, seminars and meetings at the Center for theoretical biology http://www.ctbio.science.gu.se/theoretical_biology/ Feel free to contact Karin Harding (karin.harding@marbot.gu.se) for further details. Application Send CV, two reprints, a one page statement of research interests and the names of three referees directly to: The Registrar, University of Gothenburg, Box 100, SE-405 30 Gothenburg, Sweden, stating reference number for the position E36 1191/08. Deadline for applications 15 April 2008. Trade union representatives: SACO Martin Björkman tel. +46 31-7863608, SEKO Lennart Olsson tel +46 31-7861173, OFR-S Eva Sjögren tel +46 31-7861169.
  • Post-doctoral Research Assistant: University of Dundee SMB Digest Vol 8, Issue 12 - March 20, 2008
    Post-doctoral Research Assistant, 3 Year Position. "Guidance Cues and Pattern Prediction in the Developing Retinal Vasculature: A Combined Experimental and Theoretical Modelling Approach" Professor Mark A.J. Chaplain, Dr. A.R.A. Anderson, Dr. S. McDougall Division of Mathematics University of Dundee, Institute of Petroleum Engineering Heriot-Watt University Applications are sought for the position of post-doctoral research assistant to work on an exciting inter-disciplinary research project concerning the modelling of blood vessel growth and development in the retina. We seek a talented individual with a PhD and background in applied mathematics, physics or other numerate discipline to work in a lively, multi-disciplinary research environment with three research-active supervisors in internationally-acclaimed departments (Mathematics Grade 5, Petroleum Engineering Grade 5* in the last RAE). A knowledge of ordinary and partial differential equations as well as computational/programming training would be an advantage. An interest in biology and the desire to work with experimentalists is necessary. The project is in collaboration with Dr. Christopher Mitchell, University of Ulster, who will be undertaking the experimental aspects of the project. Applications, with full CV and the names of two potential referees, should be sent to: Professor Mark Chaplain, Division of Mathematics, University of Dundee, Dundee DD1 4HN, Scotland chaplain@maths.dundee.ac.uk tel: 01382 385369 by Friday 11th April 2008.
  • Research Positions: Theoretical Systems Biology, Dresden SMB Digest Vol 8, Issue 12 - March 20, 2008
    Three research positions "Theoretical Systems Biology" at Dresden University of Technology, Germany Applications from highly qualified candidates are invited for * two full postdoctoral fellow positions for up to three years and * one PhD position for three years in theoretical systems biology, mathematical biology and computational cell biology. The goal is to discover, in close collaboration with experimental and medical partners, novel biophysical and biochemical mechanisms of information and material transport between subcellular compartments such as the plasma membrane, Golgi and nucleus as well as the spatio-temporal regulation of such mechanisms. The new members of our group will coordinate and conduct the above research and complement running projects which utilise a broad spectrum of theoretical tools with a focus on multi-scale modelling of spatio-temporal pattern formation. The ideal postdoctoral candidate holds a Ph.D. in physics, applied mathematics or biology (or similar), has demonstrated expertise in systems biology, biophysics, nonlinear dynamics, stochastic methods or network analysis and has a strong interest in molecular cell biology. The Ph.D. candidate should possess a masters or diploma degree in physics or applied mathematics. A high level of motivation and commitment are required. Strong communication skills are important for the close collaborations with experimentalists and medical doctors. The envisaged research will be conducted at the interdisciplinary Center for Information Services and High Performance Computing (ZIH), Dresden University of Technology, Germany, which hosts a department focusing on the mathematical modelling of biological systems (head: Andreas Deutsch). The Dresden campus is characterized by a vibrant international community of researchers that performs cross-disciplinary research at the highest level in state-of-the-art research centers. The city of Dresden and its surroundings are also rich in culture and impressive scenery. ZIH is an equal opportunity employer and strives to increase the number of women in research. We also encourage and invite applications from disabled individuals, who will be given priority if suitably qualified. The positions are available from June 1, 2008. Deadline for applications (by email, including contact details of two references): April 10, 2008. Contact: Andreas Deutsch Center for Information Services and High Performance Computing (ZIH) Dresden University of Technology, Germany Tel.: +49 351 463-31943 Fax.: +49 351 463-38245 Email: andreas.deutsch@tu-dresden.de WWW: http://theobio.mtbio.de/imc
  • Positions: Computational Neuroscience, CNCR, Amsterdam SMB Digest Vol 8, Issue 10 - March 10, 2008
    Applications are invited for two research positions in the Neuroinformatics Group of the Center for Neurogenomics and Cognitive Research (CNCR), VU University Amsterdam. The positions are funded by a EU-FP7 grant for the Collaborative Large-scale Integrating Project Self-Constructing Computing Systems (SECO). Using a combined computational and experimental approach, the SECO project investigates the principles by which populations of real or artificial neurons can grow and assemble themselves into functioning circuits. The first 4-year project, for a postdoctoral researcher, is on the development of dendritic and axonal growth models. The aim is to create models for neuronal morphogenesis in which cells develop through growth cone migration and branching, and formation of synaptic connections in interaction with their environment. A major challenge is to find a balanced level of description of neuronal outgrowth based on local mechanisms and interactions in space and time that will be suitable for an algorithmic implementation. The models will be used to study the development of cortical and thalamic circuitry. The ideal candidate should combine a strong neurobiological interest and knowledge with a solid background in neuro-biophysics and extensive experience in computational modeling and computer programming. The second 4 (or 3)-year project, for a PhD student (or postdoctoral researcher), focuses on the reciprocal interactions between neuronal network structure and activity dynamics in developing neural circuits. Using computational models, we will explore the impact of activity-dependent plasticity rules on the evolution of developing neuronal networks under their own (spontaneous) firing activity. The research will be guided by the hypothesis that networks will evolve towards self-consistent states, in which firing patterns stabilizes the synaptic connectivity structure that also gives rise to these firing patterns. The ideal candidate should combine a strong neurobiological interest and knowledge with an excellent background in computational neuroscience and neuronal network research. Candidates of both projects will contribute significantly to the collaborative effort of the SECO consortium. For further information about these positions, please contact Dr. Arjen van Ooyen, arjen.van.ooyen@cncr.vu.nl, or Dr. Jaap van Pelt, jaap.van.pelt@cncr.vu.nl. Application letters including a CV, research experience, a short statement of research interests, and contact details of two referees should be sent by email to Dr. Arjen van Ooyen before the 1st of April 2008.
  • Postdoc Position: Applied Mathematics, Northwestern University SMB Digest Vol 8, Issue 9 - March 3, 2008
    The Department of Engineering Sciences and Applied Mathematics at Northwestern University expects to recruit a Postdoctoral Fellow for appointment beginning in fall, 2008 as part of an NSF sponsored Research Training Grant project. This project will provide support for the Postdoctoral Fellow for a period of up to three years. The successful candidate will teach an average of one course per quarter and will have the opportunity to work in interdisciplinary research teams on cutting edge applied mathematics research in the life sciences and mechanics. Applicants will be considered until the position is filled. This position is restricted to U.S. citizens and permanent residents. Please contact Alvin Bayliss (a-bayliss@northwestern.edu) for further details. Northwestern University is an Affirmative Action/Equal Opportunity Employer. Applications from women and under-represented minorities are encouraged.
  • PhD Fellowships & Postdoctoral Positions: CoSBi, Italy SMB Digest Vol 8, Issue 8 - February 25, 2008
    PhD fellowships and Postdoctoral positions are available at the Microsoft Research - University of Trento Centre for Computational and Systems Biology (http://www.cosbi.eu/) in Trento, Italy to conduct research in the following areas: - Modeling cell cycle regulation of yeast and mammalian cells; Modeling polarized cell growth; Cancer tissue modeling. Details at: http://www.cosbi.eu/Rpty_Activ_Dynmol.php Informal enquiries: Attila Csikasz-Nagy (csikasz at cosbi dot eu) - Evolution and dynamics of chemotaxis; Dynamics and structure of signaling pathways; Robustness against gene deletion. Details at: http://www.cosbi.eu/Rpty_Activ_Pathway.php To fill the advertised positions, we are looking for enthusiastic scientists, trained in biology, mathematics, physics, computer science, or closely related areas. Formal applications and general inquiries should be made through the web site of the Centre: http://www.cosbi.eu/Careers_Home.php
  • Postdoc Position: Biophysics/Computational Biology, Virginia Tech SMB Digest Vol 8, Issue 8 - February 25, 2008
    A postdoc position is immediately available in my lab working on a project studying protein fluctuations and its effect on cellular network dynamics. A perspective candidate should have strong background in at least one of the following fields: statistical physics, physical chemistry and chemical dynamics, and molecular biophysics. Candidates good at both analytical and numerical analysis are especially welcomed. Contact: Dr Jianhua Xing, Email: jxing@vt.edu, webpage: http://www.biol.vt.edu/faculty/xing
  • Postdoctoral Position: Cell Cycle Regulation, Virginia Tech SMB Digest Vol 8, Issue 8 - February 25, 2008
    A postdoctoral position is available immediately in John Tyson's Research Group at Virginia Tech to conduct research in the area of mammalian cell cycle regulation. The work involves modeling molecular regulatory pathways using nonlinear ordinary differential equations. Candidates must have a Ph.D. degree, experience in mathematical modeling, working knowledge of nonlinear dynamics as well as cell physiology and molecular biology, and an interest in applying models to problems in the molecular biology of cancer. Interested applicants must apply online at www.jobs.vt.edu, posting #080127. Complete the faculty application and attach a cover letter, resume/vita and list of 3 references. Review of applications will begin on March 9, 2008. Virginia Tech is an Equal Opportunity/Affirmative Action Institution
  • Postdoctoral Research Fellowship: Bioconvection, University of Glasgow SMB Digest Vol 8, Issue 8 - February 25, 2008
    University of Glasgow Department of Mathematics Grade 6; £23,692 - £26,666 per annum Grade 7; £29,139 - £32,796 per annum REF: 14084/DPO/A3 Applications are invited for an EPSRC funded postdoctoral research fellowship on "Bioconvection: hydrogen production and high concentrations in suspensions of swimming microorganisms." It is the aim of this project to investigate the coupling between algal swimming behaviour, bioconvective pattern formation, and hydrogen gas production in sulphur-stressed suspensions of dilute and concentrated green algae, with a view to improve the hydrogen yield. Applicants are expected to have an excellent record of achievement in the fields of Mathematical Biology, Modelling and Fluid Dynamics. Practical knowledge of analytical and numerical techniques in Stokes flow is desirable. Applicants with both theoretical and experimental experience in a biological or fluids area are especially encouraged to apply, although a first-rate applicant with a theory only track record will stand an equal chance. The successful applicant will be expected to work with others to achieve several objectives. The post is funded by the EPSRC (for 3 years at grade 6; or 2.5 years at grade 7) from 1st May 2008, or soon thereafter. Further details, including project information, can be obtained via http://www.maths.gla.ac.uk/ or by contacting Dr Bees (m.bees@maths.gla.ac.uk). Applications should be submitted to Dr Martin A Bees, Department of Mathematics, University of Glasgow, Glasgow G12 8QW. Closing date: 18th March 2008 More information on the position can be found at Grade 6: www.gla.ac.uk/jobs/vacancies/researchandteaching/14084g6ra/#d.en.66814 Grade 7: www.gla.ac.uk/jobs/vacancies/researchandteaching/14084ra7/#d.en.66817
  • Postdoctoral Fellowship: Systems Biology, U Western Ontario SMB Digest Vol 8, Issue 8 - February 25, 2008
    Postdoctoral Fellowship in Systems Biology of Blood Flow Regulation University of Western Ontario, London, Canada The microcirculatory physiology group in the Department of Medical Biophysics at the University of Western Ontario is seeking applications for a postdoctoral position in the development of numerical simulations of intracellular biochemical pathways and cell-cell signaling. This position is supported by a grant from the National Institutes of Health and is available for two years with the possibility of an additional year. The goal of this project is to develop an integrated, multi-scale model of local regulation of microvascular oxygen delivery in health and disease. The successful candidate will be involved in utilizing data from experimentalists on the project to develop detailed mathematical and computational models of the dynamics of ATP production and release by erythrocytes, including control mechanisms, spatial distribution, and binding to the vascular endothelium. For this position, a Ph.D. in biophysics, chemistry, or related fields, with a strong background in mathematical modeling, is preferred. Experience in modeling chemical kinetics and knowledge of ATP signaling and/or erythrocyte signal transduction are a plus. The candidate is expected to have strong programming skills. Interested candidates should send a letter of application and current CV by email to Dr. Daniel Goldman (dgoldma2@uwo.ca). Please include the names of 2-3 potential referees, but reference letters need not be sent at this stage. Review of applications will begin on March 15, 2008 and continue until the position is filled.
  • Systems Biology Posts: Aberdeen and CISBIC SMB Digest Vol 8, Issue 7 - February 18, 2008
    We are currently recruiting to the large interdisciplinary Combinatorial Responses In Stress Pathways (CRISP) team which will be jointly based at the University of Aberdeen and at CISBIC, Imperial College London. are seeking ambitious and committed scientists to join the CRISP team. This team will include four experimental biologists, four applied mathematicians, six PhD students supervised by the ten group leaders. The project will study the Systems Biology of stress responses in the medically important fungi Candida albicans and Candida glabrata. We will combine advanced modelling techniques with state-of-the-art genomics, molecular biology, biochemistry and cell biology in these pathogens. This project is funded by the BBSRC under the SABR initiative for up to five years. A PDF summary of the available posts can be found at http://www.ma.ic.ac.uk/~jstark/PDF/SABR%20Advert%20Final.pdf
  • Postdoctoral Positions: Warwick Systems Biology Centre SMB Digest Vol 8, Issue 7 - February 18, 2008
    The Warwick Systems Biology Centre (WSB) has recently received three large grants from the SABR (Systems Approaches to Biological Research) initiative funded by BBSRC and EPSRC. These are to study (i) the dynamics and function of the NF-kB signaling system (with Prof. M White, Liverpool). (ii) the robustness of plant signaling systems to temperature changes (led by Dr K Halliday, Edinburgh), and (iii) the mechanisms determining the switching between different stress responses in plants. As a results we have available a number of postdoctoral posts for people with a strong mathematical, statistical or computational background. The people appointed to these will be involved in modeling, analysis of cutting-edge biological data and experimental design and will be involved in all aspects of the biological projects. There is also a post for a bioinformatics technician. Anyone interested in any of these posts should contact Professor David Rand (d.a.rand@warwick.ac.uk) as soon as possible for further details. Please reply to d.a.rand@warwick.ac.uk Professor David Rand * Warwick Systems Biology & Mathematics Institute, * EPSRC Senior Research Fellow, * Co-director, Warwick Systems Biology, * Address: Warwick Systems Biology, Coventry House, University of Warwick, Coventry CV4 7AL, UK * tel: +44 (0)24 7652 3599 fax: +44 (0)24 7652 4182 * email: dar@maths.warwick.ac.uk * secretary/PA: J.A.Maynard@warwick.ac.uk, tel: +44 (0)24 7652 8321 * web: http://www2.warwick.ac.uk/fac/sci/systemsbiology/staff/rand/
  • Postdoc Position: ISTM, Keele SMB Digest Vol 8, Issue 6 - February 11, 2008
    The Institute of Science and Technology in Medicine (ISTM) at Keele University (www.keele.ac.uk/research/istm) is seeking to appoint a Postdoctoral Research Assistant in the area of biomechanics and mechanobiology. The work forms part of the MyJoint project (www.myjoint.org). MyJoint is an EU-funded multi-disciplinary project combining ten partners and aims to grow biological replacement joints within the patients that will use them. You will work under the guidance of Dr. Jan Herman Kuiper, Prof. Alicia el Haj and Prof. James Richardson. Your work will aim to further our understanding of the interaction between mechanical conditions and articular joint formation and you will collaborate with engineers, biologists and clinicians. You will develop novel computer models to simulate the relation between skeletal cells, physical environment, geometry, and material properties in joint formation. You will use computer models to find the effects of variations in parameters describing cells, environment and geometry on joint formation and tissue quality. You will also assist in assessing mechanical quality of tissue from and around joints produced under experimental conditions. You will compare the findings of the computer model to experimental results, and adjust the model if required. You will have a PhD degree, with a background in the physical, mathematical or engineering sciences. You should have experience in the execution of a researched project involving mathematical or computational simulation, ideally of biological processes. You should be familiar with the use of Finite Element simulation tools or alternative multi-physics tools to simulate biological processes. Experience in mechanical testing procedures of biological tissues would be an advantage. ISTM is a 5* highly rated (5A or 5* over the last three RAEs), interdisciplinary Institute housing biological and physical scientists, clinicians and engineers. You will be based at our site at the Robert Jones and Agnes Hunt Orthopaedic Hospital in Oswestry, a renowned Orthopaedic Hospital with several active clinical and research programs in orthopaedic cell therapy (www.oscell.enta.net). Informal enquiries may be directed to Dr. Jan Herman Kuiper (j.h.kuiper@keele.ac.uk) Full job packs are available from the Human Resources Department, Keele University, Keele, Staffordshire, ST5 5BG. Fax: 01782 583471 or e-mail vacancies@keele.ac.uk or www.keele.ac.uk/depts/uso/hr/cwisvacs.htm Please quote post reference: RE08/05INT Closing date for applications: 25 February 2008
  • Postdoc / Research Assistant: Cambridge Systems Biology Centre SMB Digest Vol 8, Issue 6 - February 11, 2008
    Applications are invited for the position of a postgraduate or postdoctorate researcher in the group of Dr. Karen Lipkow in the Cambridge Systems Biology Centre. The person appointed will utilise a large computer grid to study the interplay of signalling and cellular architecture through detailed simulations. The project is funded by the EU-IndiaGrid and involves collaboration with the National Centre for Biological Sciences in Bangalore, India. The ideal candidate has good programming skills (especially C/C++), experience with Grid Computing and an interest in computational cell biology. However, suitable training will be given where required. The post is for 6-8 months in the first instance, with a possibility of extension subject to the availability of funds. The position is available immediately. Applications should include a covering letter describing relevant research experience to date, a CV, completed PD18 form (Part 1 and 3) and the names and addresses of two referees. These should be sent quoting the reference by email by 29th February 2008 to jobs@bioc.cam.ac.uk or post to The Principal Assistant, Department of Biochemistry, Building O, Downing Site, Tennis Court Road, Cambridge, UK, CB2 1QW.Informal enquiries can be directed to K. Lipkow: KL280@cam.ac.uk. Quote Reference: PH02992 Closing Date: 29 February 2008
  • Software Developer/Research Associate/Post Doctoral Fellow, Indiana U SMB Digest Vol 8, Issue 6 - February 11, 2008
    The Indiana University Biocomplexity Institute seeks a Research Assistant, Research Associate or Post Doctoral Fellow to participate in research on the development and improvement of the Tissue Simulation Environment (compucell3d.org). Rank is commensurate with experience. There is a possibility that two positions will be filled. Preferred skills and abilities include extensive experience in C++, Python, user interface design and implementation. Candidate should be able to interact with users and help prepare training workshops. Should be able to work in a small team environment with limited supervision. Position will offer opportunities to collaborate on new research projects and participate in publications with Biocomplexity Institute scientists. Areas of interest include Monte Carlo methods, statistical mechanics, fluid dynamics, partial differential equations, mathematical modeling of biological systems, computer graphics visualization, and scientific software development. Skills in numerical modeling, graphics and visualization, or parallel programming are a plus, as is having a strong (Masters or Ph.D.) scientific background. Technical writing and documentation Review of applicants will begin immediately and continue until position is filled. [Initial appointment will begin March 1'st , 2008 (precise starting date negotiable)] and is expected to last one year with extension possible, subject to satisfactory performance. Please send a CV and arrange to have 3 letters of recommendation sent to glazier@indiana.edu or by mail to Prof. James Glazier, Biocomplexity Institute, Indiana University, Bloomington, IN 47405, U.S.A. Indiana University is an equal opportunity / affirmative action employer.
  • Postdoc and PhD Positions: Mathematical Biology, Helsinki SMB Digest Vol 8, Issue 5 - February 4, 2008
    The Mathematical Biology Group at the Department of Biological and Environmental Sciences, University of Helsinki, Finland (leader Dr. Otso Ovaskainen) is seeking outstanding, highly motivated candidates to join research projects at the interface between mathematics and ecology and evolutionary biology. Successful candidates may have their training either in mathematics or in biology, the main criteria being the potential to perform top-quality research. We anticipate hiring up to 4 postdoctoral researchers or Ph.D. students over the next 3 years. Research projects will be developed in conjunction with the interests of the successful candidates, focused on the following areas: 1. The roles of space and stochasticity in population dynamics 2. Metacommunity dynamics of wood-decaying fungi 3. Animal movement in heterogeneous environments 4. Bayesian approaches in evolutionary quantitative genetics The PhD student positions are available for 4 years. The postdoc positions are for 1 year, with the possibility of a 2-year extension. The Mathematical Biology group is part of the Metapopulation Research Group (leader Prof. Ilkka Hanski), which is a Centre of Excellence in Research supported by the Academy of Finland. We offer an international research environment with excellent possibilities to cooperate with experts in mathematics, statistics, population biology, and evolutionary ecology. Salary and social benefits according to the University of Helsinki Salary system, around 2,300 Euro/month for PhD students and 3,100 Euro/month for post docs (the latter negotiable). Applications including a short CV (max 3 pages), list of publications, and the e-mail addresses of two researchers willing to write a letter of reference should be sent to otso.ovaskainen@helsinki.fi with cc to tuuli.ojala@helsinki.fi; write either "postdoc position" or " PhD student position" on the subject line. For more details on the research projects and on the application procedure, see http://www.helsinki.fi/science/metapop/MBG/positions/index.htm Deadline for applications 14th March 2008, starting date 1st May 2008 (negotiable).
  • Postdoctoral Fellowship: Modeling of Viral Transcriptional Circuitry SMB Digest Vol 8, Issue 4 - January 30, 2008
    Dr. Leor S Weinberger's laboratory (recently moved from Princeton) seeks applicants for a postdoctoral fellowship (2-3 years) exploring HIV and viral transcriptional regulation. The specific research project is flexible and can be tailored to the interests of the individual, but should fall under the broad fields of transcriptional regulation and circuitry. Our lab is a joint theoretical and experimental lab ( http://chem-faculty.ucsd.edu/weinberger) that stresses close interaction between theorists and experimentalists and houses all the computational resources and the wet-lab experimental infrastructure (including several confocal microscopes for live single-cell time-lapse imaging) required for joint theoretical/experimental projects. Applicants will be considered from a diverse spectrum of backgrounds (including PhDs in mathematics, statistics, physics, biology or related areas) but preference will be for highly motivated applicants with excellent communication skills. The ideal candidate should also have good interaction capability with experimentalists and a proven record of independent research. The postdoctoral fellowship provides a competitive annual stipend plus benefits and health insurance. Start date and term are negotiable. Applications are welcome from candidates of any nationality, and will be reviewed on a rolling basis. UCSD offers an outstanding intellectual environmental with many top-five ranked scientific departments (including Biochemistry and Bioengineering), a highly regarded medical school, a Center for Theoretical Biological Physics (CTBP), and close proximity to the Salk and Scripps Institutes. Highly motivated applicants are encouraged to email a statement of research interests, CV, and contact details for three references to lsw (at) ucsd.edu. Informal inquiries are also welcome.
  • Postdoc: Biomathematical Modeling, BWH & Harvard Medical School SMB Digest Vol 8, Issue 4 - January 30, 2008
    POSTDOC OPPORTUNITY (1 opening) in BIOMATHEMATICAL MODELING with Elizabeth Klerman, Division of Sleep Medicine, Brigham and Women's Hospital and Harvard Medical School Projects cover a range of topics in dynamics of circadian rhythms and sleep at the network level, utilizing physiologically-based models, in deterministic and stochastic frameworks. Projects typically involve close collaboration with experimentalists, both analyzing and modeling data as well as designing experiments. The Division of Sleep Medicine is interdisciplinary, with members from backgrounds in applied mathematics, computer science, statistics, physiology, psychology and medicine. The rich environments of the Division of Sleep Medicine (http://sleep.med.harvard.edu) and the Harvard Medical School (www.hms.harvard.edu) offer many opportunities for career development through seminars, lab meetings, formal courses and interaction with other groups. Currently seeking applicant for: Modeling of dynamical circadian rhythms and sleep processes. Potential projects involve multi-dimensional data sets of human circadian rhythms, sleep, neurobehavioral performance and alertness. We are interested in quantifying inter-individual differences and using these to predict performance and sleep. Current funding for this work is from NSBRI (NASA), AFOSR and NIH. A desirable candidate will have skills and knowledge in applied mathematics and statistics. Applicants with additional background and experience with engineering, signal processing, dynamical systems, simulation, and/or computational modeling are especially encouraged to apply. Knowledge of MatLab is appreciated. A course in circadian rhythms and sleep will be offered in fall 2008 that the candidate will be expected to attend. The initial appointment is for 2 years, renewable annually thereafter. Interested candidates should send a letter of interest, curriculum vitae, and contact information for three references to: Elizabeth B Klerman MD PhD, Division of Sleep Medicine, Brigham and Women's Hospital, 221 Longwood Ave, Boston MA 02115, Email: Ebklerman@hms.harvard.edu Harvard Medical School and Brigham and Women's Hospital are Affirmative Action/Equal Opportunity Employers. We strongly encourage applications from women and minority candidates.
  • Postdoc Position: Biocomplexity Institute, Indiana University SMB Digest Vol 8, Issue 4 - January 30, 2008
    Software Developer/Research Associate/Post Doctoral Fellow The Indiana University Biocomplexity Institute seeks a Research Associate or Post Doctoral Fellow to participate in research on the development and improvement of the Tissue Simulation Environment (compucell3d.org). Rank is commensurate with experience. There is a possibility that two positions will be filled. Preferred skills and abilities include extensive experience in C++, Python, user interface design and implementation. Candidate should be able to interact with users and help prepare training workshops, and should be able to work in a small team environment with limited supervision. Position will offer opportunities to collaborate on new research projects and participate in publications with Biocomplexity Institute scientists. Areas of interest include Monte Carlo methods, statistical mechanics, fluid dynamics, partial differential equations, mathematical modeling of biological systems, computer graphics visualization, and scientific software development. Skills in numerical modeling, graphics and visualization, or parallel programming are a plus, as is having a strong (Masters or Ph.D.) scientific background. Technical writing and documentation experience also preferred. Review of applicants will begin immediately and continue until position is filled. Initial appointment will begin as early as January 7, 2008, and is expected to last one year with extension possible, subject to satisfactory performance. Please send a CV to Randy Heiland (heiland@indiana.edu). Indiana University is an equal opportunity / affirmative action employer.
  • Postdoc Opening: Interaubio Project, University of Lyon 1 SMB Digest Vol 8, Issue 3 - January 22, 2008
    The Interaubio project gathers teams of modellers and biologists to better understand the functioning, dynamics and evolution of infection by small RNA viruses in mammals. This call for a postdoc of one year (with the possibility of extending it for one more year) is part of this collaborative and strongly interdisciplinary project that involves more than 14 permanent researchers. The core of the project associates experimental research on the interactome of host/virus pathogens with an integrated modelling of different biological networks (protein-protein, metabolic and genetic) in terms of both their structure and their dynamics. The relative simplicity of the biological system studied (the number of viral proteins is small) and the availability of original data from the biological labs participating in this ambitious project offers it a good feasibility. The specific objective of the postdoc is to integrate into the modelling process data coming from the literature on gene expression. The successful candidate will be in charge of doing a meta-analysis of the whole set of published data on the transcriptome of infected cells. He/she will build a database that integrates both published experimental data and computer generated results. The database query system should be applicable to both types of data, including data from previously integrated computer analyses, for instance, to enable an exploration of sets of differentially expressed genes. The results of such queries may lead to the development of further experiments by the wet-lab partners. The postdoc candidate will also work in strong relationship with the researchers developing models for the interactome. The skills required are a good level in bioinformatics which includes a solid background in the statistics of the transcriptome and a good knowledge of database development (within a relational framework, the SGBDI that will be used will be postgres) . A taste for participating in a strongly interdisciplinary and collaborative project is absolutely necessary. Person to contact for further information: Christian Gautier, UMR 5558 Biometrie et Biologie Evolutive, Universite Claude Bernard, Lyon I, 43, Bd du 11 novembre 1918, 69622 Villeurbanne cedex, France, Fax: +33 (0)4 72 43 13 88. email: cgautier@biomservuniv-lyon1.fr
  • Postdoc Position: Mathematical Modeling (Kidney Function), Duke SMB Digest Vol 8, Issue 2 - January 15, 2008
    Applications are solicited for a postdoctoral position in mathematical biology that involves modeling various aspects of kidney function, and teaching one course per year. A Ph.D. in mathematics (or a related quantitative field) and proficiency in computer programming and scientific computing are required; experience in mathematical modeling is desirable. The initial appointment is for two calendar years beginning June 1 (negotiable); it may be renewable. Please submit an AMS standard coversheet, a curriculum vita, a description of current and completed research (1-3 pages), and four letters of recommendation, one of which evaluates teaching skills. The AMS Standard Cover Sheet should be completed online at www.mathjobs.org/jobs/duke/. Applicants are encouraged to submit other materials electronically at this site; they may also mail them to: Prof. Anita Layton, Department of Mathematics, Box 90320 Duke University, Durham, NC 27708-0320 Duke University is an affirmative action/equal opportunity employer.
  • Post-Doctoral Associate: University of Pittsburgh RTG SMB Digest Vol 8, Issue 2 - January 15, 2008
    RTG Post-Doctoral Associate (www.math.pitt.edu/~cbsg -- coming soon!) The Department of Mathematics at the University of Pittsburgh invites applications for postdoctoral appointment starting the Fall Term 2008 subject to final funding approval. The appointment is renewable annually to a maximum of three years. The position will likely be funded jointly by the University of Pittsburgh and a new NSF Research Training Group (RTG) grant on Complex Biological Systems across multiple space and time scales. The research areas covered by the RTG include (i) the development and analysis of mathematical models and computational algorithms for solving spatio-temporal problems arising in biology and (ii) the applications of these and other methods to problems arising in inflammation and neuroscience. To be successful, a candidate must demonstrate excellence in research, and must also have strong commitment to excellence in teaching at both the undergraduate and graduate levels. Candidates should be willing to work closely with experimentalists and clinicians. All applications must include the following: (1) a curriculum vita, (2) a personal statement addressing their research agenda, (3) a statement of teaching philosophy, (4) a completed AMS Standard Cover Sheet form and (5) at least three letters of recommendation. Applications should be submitted electronically through http://www.mathjobs.org. If the candidate is unable to submit electronically, materials may be sent to: Postdoctoral Search Committee in Complex Biological Systems, Department of Mathematics, University of Pittsburgh, Pittsburgh, PA 15260. Review of completed files will begin on January 10, 2008 and continue until the position is filled. The University of Pittsburgh is an Affirmative Action, Equal Opportunity Employer. Women and members of minority groups under-represented in academia are especially encouraged to apply. NSF restrictions require that eligible candidates must be US citizens or permanent residents.
  • Postdoctoral Position: Mathematics, Critical Care Medicine, U Pitt SMB Digest Vol 8, Issue 2 - January 15, 2008
    The Centre for Inflammation and Regenerative Modeling and the Departments of Mathematics and Critical Care Medicine at the University of Pittsburgh are seeking applications for a two-year post-doctoral position. Specific research topics include modeling of immune response to influenza virus infection and pulmonary inflammation modeling. The successful candidate will operate in a truly interdisciplinary environment in an established and successful mathematical biology group. A strong background in dynamical systems modeling, an interest in data assimilation, and significant expertise in computational implementation of optimization algorithms including Monte Carlo techniques in a grid environment would constitute strong assets. Minority and female applicants are encouraged. Salary and fringe benefits are very competitive. Please direct enquiries to: Bard Ermentrout or David Swigon, Department of Mathematics University of Pittsburgh, bard@math.pitt.edu, swigon@pitt.edu Gilles Clermont, MD Department of Critical Care Medicine Medical Director, Center for Inflammatory and Regenerative Modeling University of Pittsburgh clermontg@upmc.edu
  • Postdoctoral Position: Biomathematics, UCLA SMB Digest Vol 8, Issue 1 - January 9, 2008
    A postdoctoral research position is open in the group of Prof. Tom Chou (http://www.biomath.ucla.edu/tchou) in the Dept. of Biomathematics at UCLA. Although the position is research grant-funded, the research scope is quite broad, so self-motivated applicants with a strong background in applied mathematics, statistical mechanics/stochastic processes, numerical/simulation techniques, and cellular biology are sought. Funded research areas include, but are not limited to time-inhomogeneous stochastic processes and their applications to cell and population biology, the physical mechanisms of viral replication and entry, RNA interactions and structure, cellular transport, and tissue mechanics and growth. The position is available immediately or in the coming months, and affiliation with the Dept. of Mathematics is possible. Salary will be commensurate with experience and qualifications. Please email CV and list of publications to: tomchou@ucla.edu Please also have three references emailed to the same address.
  • Postdoctoral Fellowship: Evolutionary Theory, Queen's University SMB Digest Vol 8, Issue 1 - January 9, 2008
    Applications are sought from outstanding researchers for a 2-year postdoctoral position in evolutionary theory, working in the lab of Dr. Troy Day in the Departments of Mathematics and Statistics and the Department of Biology at Queen's University (www.mast.queensu.ca/~tday). The specific research topic is wide open, with current projects in the lab focusing on developing theory for kin selection and spatial models of evolution, host/parasite epidemiology and (co)evolution, evolutionary immunopathology, genomic imprinting and nongenetic inheritance, and coral bleaching. The successful applicant will be free to conduct research in any of these or other related areas of interest. Ideally the position will be taken up by Sept. 1, 2008 but there is some flexibility in start date. Salary will be C$40,000 per year. Information about the Department of Mathematics and Statistics, the Department of Biology, and Queen's University can be found at www.mast.queensu.ca, http://biology.queensu.ca and www.queensu.ca respectively. To apply, send a current CV and a statement of research interest to Troy Day via email (tday@mast.queensu.ca). Please include the names of 2-3 potential referees, but applicants need not solicit reference letters at this stage. Review of applications will begin on February 15, 2008 and continue until the position is filled.
  • Postdoctoral Fellow: Mathematical Models in Spatial Ecology, Ottawa SMB Digest Vol 8, Issue 1 - January 9, 2008
    Applications are invited for a postdoctoral fellowship in mathematical ecology at the University of Ottawa in the Department of Mathematics and Statistics. The goal of this interdisciplinary project, which is funded by the Ontario Ministry of Research and Innovation, is to construct and analyze mathematical models for food-webs in river ecosystems. The research will address questions of how different natural and human disturbances and climate change affect population persistence, non-native species invasion, and the composition of existing food-webs on several temporal and spatial scales. The position is based in Ottawa, Canada's capital, but research collaborations exist with several other research groups in North America (e.g., Calgary, Edmonton, Santa Barbara). It is expected that the successful candidate will spend time visiting these groups for collaboration and exchange. Applicants should hold a PhD in Applied Mathematics or a related field with strong background in modeling, analysis (ODEs, PDEs), and computation. Previous exposure to ecological models or previous collaborations with experimentalists (biologists, ecologists) are an asset. The position is for one year with a possibility of renewal for a second year. The position includes teaching duties of one one-semester course per year. Salary is approximately $42,000 per year plus benefits. A small budget for conference travel is also available. The application should include a detailed CV together with a cover letter stating research interests, as well as three names of potential references. Electronic applications are strongly encouraged. Review of applications will start immediately and will continue until the position has been filled. For further information or to apply please contact Prof. Frithjof Lutscher (flutsche@uottawa.ca). Employment equity is University policy and the University strongly encourages applications from women, minorities and other underrepresented groups.
  • PhD/Postdoc Position: Simulating Cardiac Arrhythmias, Simula Research SMB Digest Vol 8, Issue 1 - January 9, 2008
    Simula Research Laboratory conducts basic research in the fields of communication technology, software engineering and scientific computing. The research in the Scientific Computing (SC) department is focused on the development of numerical methods, algorithms and software, and large-scale biomedical and systems biology oriented simulation studies applying these methods. To further strengthen our research in the area of cardiac modeling we seek a candidate for an available PhD or Postdoc position. The research will be focused on simulating cardiac arrhythmias using a biophysically detailed model of the human heart, and will be supervised by a new member of our research group; Dr Kirsten ten Tusscher. Despite the large socioeconomic costs of people suffering from cardiac arrhythmias and sudden cardiac death and despite decades of research the causes and mechanisms of cardiac arrhythmias are still poorly understood. The goal of the current research project is to contribute to a better understanding of the anatomical structures and biological processes important in causing arrhythmias. More specifically, in the project we will look at the role of anatomical heterogeneities present in cardiac muscle (capillaries, connective tissue, intricate anatomical structures such as Purkinje system, and the papillary and trabecular muscles of the heart) in arrhythmia dynamics. In addition, we will study the complex role of intracellular calcium (involved in excitation, contraction and metabolism) in arrhythmia dynamics. Simula offers excellent opportunities for doing high quality research, generous support for travels and equipment, and competitive salary (around 47.000,- Euro/69.000,- USD for a Ph.D. position and 58.000,- Euro/84.500,- USD for a Postdoc position). We are looking for candidates with a strong interest in biological and biomedical research and a University degree in physics, applied mathematics, computer science, artificial intelligence, biomedical engineering, or computational biology. The position requires excellent English writing skills and high marks from the BSc and MSc degree. Women are encouraged to apply. For more information visit http://www.simula.no/jobs or contact Kirsten ten Tusscher (tentussc@simula.no) or Joakim Sundnes (sundnes@simula.no). To apply for these positions, email a short application letter, curriculum vitae, copies of transcripts and grades, and a publication list to jobs@simula.no. The subject of the email must contain 0810 Scientific Computing. Application deadline: February 15, 2008
  • Postdoctoral Positions: Infectious Disease Modeling, Taiwan SMB Digest Vol 8, Issue 1 - January 9, 2008
    Positions: 1-2 Postdoctoral positions to work on mathematical modeling and statistical analysis of infectious diseases epidemiology in the newly formed infectious disease modeling group at Biostatistics Center, China Medical University, Taichung, Taiwan. Background needed: Strong potential in Mathematics, Statistics, Ecology, Physics, Biostatistics, Epidemiology, or related modeling/computation degree. Past experience in modeling of infectious disease epidemiology or ecology is preferred but not required. Salary: NT$55,000-75,000/month depending on qualification, plus 1.5 month bonus each year (1 US$=33 NT$); airfare reimbursement possible, full health insurance coverage. Term: Positions are 1-3 years, subject to renewal of grant. Time: Starting August 1, 2008 (with some flexibility). Location: Biostatistics Center, College of Public Health, China Medical University, Taichung, Taiwan (Website: http://www.cmu.edu.tw or http://english.cmu.edu.tw/). Taichung is a city of 1 million in the central part of Taiwan, two hours south of Taipei. (See http://www.tccg.gov.tw/eng/index.htm) To apply: Send CV, statement of research interest, and 3 references to Professor Ying-Hen Hsieh, email address: hsieh@mail.cmu.edu.tw. (Webpage: http://amath.nchu.edu.tw/~yhhsieh) To receive full consideration for August 2008 starting date, please send application as soon as possible.

    Faculty and Other Positions

    • Group Leader: Biomodeling & Biosystems Analysis, NISB, Amsterdam SMB Digest Vol 8, Issue 14 - April 8, 2008
      Group leader biomodeling and biosystems analysis Netherlands Institute for Systems Biology (NISB, www.sysbio.nl) Amsterdam, The Netherlands The Netherlands Institute for Systems Biology (NISB, www.sysbio.nl) is a joint venture of the two Amsterdam universities (the Vrije Universiteit and the University of Amsterdam) and two national research institutes in Amsterdam (the CWI (Netherlands research institute for mathematics and computer science) and AMOLF (FOM Institute for Atomic and Molecular Physics)). The Netherlands Genomics Initiative (NGI, www.genomics.nl) has recently initiated the Netherlands Consortium for Systems Biology (NCSB), a 15 million Euro national research program to implement systems biology in ongoing research lines of seven high ranking Dutch research groups in the fields of biomedical and biotechnological research. As part of this investment a Biomodeling and Biosystems Analysis Group will be set up in the Netherlands Institute for Systems Biology (NISB) in Amsterdam. The task of the Biomodeling and Biosystems Analysis Group is to develop generic as well as specific tools and approaches for modeling and analysis of complex biological systems, specifically those that are addressed in the context of the NCSB program. The group will be housed in Amsterdam in the premises of one of the four parties that constitute the NISB (two universities and two national research institutes in Amsterdam). The group leader has a budget of 1.5 million Euro for a period of five years. A tenure position can be negotiated for this function. In addition to the postdocs, PhD students and other personnel in the group, the group leader will be responsible for the modeling and system analysis activities of about twelve investigators (postdocs and PhD students) that are positioned in the different biomedical and biotechnological research groups that participate in the NCSB program. In this, the Biomodeling and Biosystems Analysis Group plays a central role in the NCSB program. Candidates should fulfill the following criteria. - Strong track record in modeling and analysis of complex biological systems based on experimental data sets. - Able to build bridges between mathematicians/physicists/informaticians and experimental biologists. - Proven leadership. - Able to communicate with researchers in the fields of biomedical and biotechnological research. Application should be send to the director of the Netherlands Institute for Systems Biology (NISB): prof. Dr Roel van Driel, c/o University of Amsterdam, Kruislaan 318, 1098SM Amsterdam, the Netherlands. Information can be obtained from the same person (office: +31 (0)20 525 5150; home: +31 (0)251 657 356; mail: van.driel@science.uva.nl). Deadline May 1st, 2008.
    • Computational Biologist
      Dow AgroSciences seeks a Computational Biologist to assist in the analyses of biological datasets. This position is located in Indianapolis, IN, USA. Applicants should have a Ph.D. in computer sciences, bioinformatics, computational biology, statistics or closely related field, with emphasis in machine learning. A solid foundation on statistics is preferred. The successful candidate will join the R&D Operational Excellence function and will work closely with scientists in the company's Plant Genetics & Biotechnology R&D organization. Key job responsibilities will include development and application of machine learning and statistical algorithms and software to mine biological datasets. Extensive development of software to integrate and automate data for mining is also expected. Topics of interest include bioinformatics, Bayesian networks, support vector machines, instance-based algorithms, decision trees, neural networks, and mixed models. Analysis of biological experiments, interpretation and presentation of results are also expected; as well as to act as a guide for the ongoing research process. The candidate will also be expected to identify and implement new quantitative methods that improve the integrity and efficiency of Dow AgroSciences product development cycle. Demonstrated ability to write scientific papers is also desirable. Strong communication skills are essential along with an ability to collaborate effectively with both laboratory and field scientists. Please visit www.dowagro.com/careers to apply online for this position. The deadline for the submission of applications is May 10, 2008. Dow AgroSciences, LLC is a wholly-owned subsidiary of The Dow Chemical Company, one of the top companies for research and development in the US. Dow AgroSciences, LLC is a top tier agricultural company providing innovative crop protection, pest and vegetation management, seed, and agricultural biotechnology solutions to serve the world's growing population. We do this through a people-centric performance culture, through our commitments to sustainable development and environmental stewardship, and through collaborations with world-class institutions. Dow AgroSciences is an equal opportunity employer offering excellent career opportunities, as well as competitive compensation and benefits package.
    • Tenured Positions: Systems and Synthetic Biology, Evry SMB Digest Vol 8, Issue 12 - March 20, 2008
      Dear Colleague, I am seeking your help in identifying suitable high-level candidates for: - 1 tenured Associate Professorship in Synthetic Biology and Biophysics (1); - 1 tenured Assistant Professorship in Systems Biology and Genome Architecture (2). Interested applicants must have been previously "qualified" by the French ministery (Qualifications au CNU), and should apply by regular mail to the University before April 01, 2008. Coming up soon on http://www.univ-evry.fr/PagesHtml/RecrutementEC_2008.htm Please encourage interested applicants to contact me ASAP. Yours sincerely, François Képès http://www.epigenomique.genopole.fr/~kepes Epigenomics Project, Genopole® Tour Évry2, 10th floor, 523 Terrasses de l'Agora F-91034 ÉVRY cedex, FRANCE Francois.Kepes@epigenomique.genopole.fr Phone: 33 1 69 47 44 31 Assistant: 33 1 69 47 44 30 Fax: 33 1 69 47 44 37 These two Professorships will start in Sept 2008 in Evry near Paris. Research will take place at the newly founded institute of Systems and Synthetic Biology (iSSB) of Genopole®. Genopole® is the largest French Biopark, with over 60 biotech companies and over 20 academic laboratories, and a total of about 2000 scientists. iSSB offers a creative and interdisciplinary setting in a brand new 2000 m2 building opening at the end of the year (a brief description is attached). Teaching will be at the Department of Biology, University of Evry (yet non-biologists are strongly encouraged to apply).
    • Professor: Biostatistics, Free University of Brussels SMB Digest Vol 8, Issue 12 - March 20, 2008
      Open position for a professor in Biostatistics at the Department of Mathematics of ULB (Free University of Brussels) starting in October 2008. Description The Faculty of Sciences of the Free University of Brussels (ULB) announces the opening of a full-time position for a "chargé de cours" (first professorial level) in Biostatistics starting October the 1st, 2008. This is a tenured full-time permanent position within the Department of Mathematics. The position involves both teaching and research and some commitment to administrative tasks. For candidates not fluent in French, a temporary period of teaching in English may be granted. The candidate will be expected to create a Master in Biostatistics. Evaluation will be based on the ability to create a research group, as well as participating to high quality teaching at the Department of Mathematics. Candidates are required to have a PhD in mathematics, research papers published at an international level in the domain of biostatistic, and should demonstrate their ability for teaching at university level. A significantly long research stay in a foreign university or research laboratory will be considered as an advantage. The successful candidate should progressively increase the teaching activities to reach a level comparable to that of other professors(typically 5 hours a week for two semesters). This position will become permanent after a trial period of three years. How to apply ? Applications should be sent as soon as possible, and before May, 1st 2008 to the following address: Professeur Philippe Vincke, Recteur de l'ULB ULB CP 130 Av F.D. Roosevelt B-1050 Bruxelles with subject :"Vacance Chargé de cours en biostatistique au Département de Mathématique, Sciences". A copy of the application should be sent to: Professeur Simone Gutt Présidente du Département de Mathématique ULB CP 218 Campus Plaine Boulevard du Triomphe B-1050 Bruxelles The application should consist of a description of the candidate's research goals, a curriculum vitae and a copy of the most significant publications (up to five). Additional information : As stated by the 1rst article of its statute, the University of Brussels is a non discriminating institution and all its members are expected to adhere to its fundamental principles. For any additional information please contact Prof. Simone Gutt ( sgutt@ulb.ac.be ), head of the Department of Mathematics.
    • Tenure-Track/Tenured Investigator Positions, NCI, NIH SMB Digest Vol 8, Issue 10 - March 10, 2008
      EPIDEMIOLOGIST, INFECTIONS AND CANCER Tenure-Track/Tenured Investigator Position The new Infections and Immunoepidemiology Branch (IIB, http://www.dceg.cancer.gov/iib) in the Division of Cancer Epidemiology and Genetics (DCEG), National Cancer Institute (NCI), National Institutes of Health (NIH), Department of Health and Human Services (DHHS), is recruiting for a tenure-track/tenured epidemiologist with experience and interest in the study of infectious agents and cancer risk. Research at the IIB focuses on understanding the causes and mechanisms involved in the development of tumors linked to infectious agents and in understanding the mechanisms underlying successful immune responses as they relate to cancer risk and to successful responses to vaccination. Both infectious and host immunological factors are considered in the context of human epidemiological studies. Studies undertaken by the group are often large, international and include rich biological specimen components to permit in-depth evaluation of biological processes, including immunological and inflammatory mechanisms, involved in tumor development using state-of-the-art techniques. The Branch houses the 7,500 woman community-based vaccine trial in Costa Rica designed to evaluate the efficacy and impact of a new HPV-16/18 virus-like particle vaccine and has an active set of studies aimed at evaluating the role of numerous infectious agents (including EBV , HIV, HPV, HTLV-1, and KHSV) and tumor sites (including cervical cancer, gastric cancer, Hodgkin and non-Hodgkin lymphomas, lung cancer, nasopharyngeal carcinoma, and oral/oropharyngeal cancers). Recent efforts have also begun to explore how the microbiome might affect immunity and long-term cancer risk. The successful candidate will receive research support from the intramural research program of NIH for conducting innovative studies aimed at elucidating the role of infectious agents in tumor development. Applicants must have an M.D. and/or Ph.D. in epidemiology or a related field, and considerable post-doctoral experience in cancer epidemiology, viral epidemiology, molecular epidemiology, microbial genomics and/or tumor immunology. A record of peer-reviewed publications in one of these fields is required. A demonstrated ability to lead complex epidemiologic investigations is highly desirable. The successful candidate should have strong analytical/quantitative skills, a good understanding of biological processes, and a demonstrated ability to collaborate across disciplines. Strong or al and written communication skills are an important requirement. Applications will be evaluated on their ability to develop a creative, independent program of epidemiological research applicable to understanding infectious determinants of cancer risk; and to collaborate effectively in a multidisciplinary setting. IMMUNOEPIDEMIOLOGIST Tenure-Track/Tenured Investigator Position The new Infections and Immunoepidemiology Branch (IIB, http://www.dceg.cancer.gov/iib) in the Division of Cancer Epidemiology and Genetics (DCEG), National Cancer Institute (NCI), National Institutes of Health (NIH), Department of Health and Human Services (DHHS), is recruiting for a tenure-track/tenured epidemiologist with experience and interest in the study of immunology and cancer. Research at the IIB focuses on understanding the causes and mechanisms involved in the development of tumors linked to infectious agents and in understanding the mechanisms underlying successful immune responses as they relate to cancer risk and to successful responses to vaccination. Both infectious and host immunological factors are considered in the context of human epidemiological studies. Studies undertaken by the group are often large, international and include rich biological specimen components to permit in-depth evaluation of biological processes, including immunological and inflammatory mechanisms, involved in tumor development and vaccination responses using state-of-the-art techniques. The Branch has an active set of studies aimed at evaluating the role of numerous infectious agents (including EBV, HIV, HPV, HTLV-1, and KHSV) and tumor sites (including cervical cancer, gastric cancer, Hodgkin and non-Hodgkin lymphomas, lung cancer, nasopharyngeal carcinoma, and oral/oropharyngeal cancers). Recent efforts have also begun to explore how the microbiome might affect immunity and long-term cancer risk. The successful candidate will receive research support from the intramural research program of NIH for conducting innovative studies aimed at elucidating inflammatory and immunological mechanisms of HPV-related or other cancers and/or vaccine responses. Applicants must have an M.D. and/or Ph.D. in epidemiology or a related field, and considerable post-doctoral experience in cancer epidemiology, molecular epidemiology, and/or tumor or vaccine immunology. A record of peer-reviewed publications in one of these fields is required. A demonstrated ability to lead complex epidemiologic investigations is highly desirable. The successful candidate should have strong analytical skills, a good understanding of biological/immunological processes, and a demonstrated ability to collaborate across disciplines. Strong oral and written communication skills are an important requirement. Applications will be evaluated on their ability to develop a creative, independent program of epidemiological research applicable to understanding infectious determinants of cancer risk; and to collaborate effectively in a multidisciplinary setting. Interested individuals should send a cover letter, curriculum vitae, a brief summary of research experience, accomplishments and research interests and goals, copies of three publications or preprints, and three letters of reference to: Ms. Judy Schwadron Division of Cancer Epidemiology and Genetics National Cancer Institute 6120 Executive Blvd. EPS/8073 Bethesda, MD 20892 Candidates should submit applications by May 30, 2008; however, the search will continue until a qualified candidate is found. Additional information about staff and ongoing research in the Division of Cancer Epidemiology and Genetics and in the Infections and Immunoepidemiology Branch is available at http://www.dceg.cancer.gov. Prospective applicants should send E-mail inquiries to Allan Hildesheim, Ph.D., Branch Chief (hildesha@exchange.nih.gov). This position is subject to a background investigation. DHHS and NIH are Equal Opportunity Employers.
    • Instructorship Position: Computational and Applied Mathematics, Rice U SMB Digest Vol 8, Issue 9 - March 3, 2008
      The department of Computational and Applied Mathematics at Rice University is seeking an NSF VIGRE Instructor. Candidates must be US citizens or permanent residents with a Ph.D. in a math-heavy field with focus on math biology, preferably computational neuroscience. Duties include teaching one course per semester and co-organization of a research seminar. Please reply to cox@rice.edu Steve Cox Professor of Computational and Applied Mathematics Director: Gulf Coast Consortium for Theoretical and Computational Neuroscience http://cohesion.rice.edu/centersandinst/gcc/neuro.cfm Rice University 6100 South Main Street Hosuton, TX 77005
    • Research Position: Computational Cardiology, CRS4, Italy SMB Digest Vol 8, Issue 8 - February 25, 2008
      The Bioinformatics Laboratory of CRS4 (Center for Advanced Studies, Research and Development in Sardinia) invites applications for a position to work in the area of Virtual Physiological Human research. The successful candidate will work within the frame of an EU funded research project aiming at creating an advanced computational technology for in silico assessment of drug cardiac toxicity, cooperating with leading groups in the field. The applications we are targeting require the development of simulation tools at a very large scale on massively parallel computers (the entire heart or parts of it). The candidate will investigate adaptive numerical algorithms to handle nonlinear wave propagation in 3D diffusion-reaction systems and implement it on high-performance platforms. The suitable candidate ideally has a PhD or Master preferably from engineering, mathematics or physics background with sufficient work experience in relevant areas. Essential skills for this position include numerical techniques for solving PDEs, linear algebra and computer (parallel) programming. The position is for 3 years, starting not later than june 2008. Appointments can be made at either junior or senior level, depending on previous experience and curriculum. Interested candidates are encouraged to submit their application as soon as possible. Please send your CV, a cover letter describing your background and research interests, and the names and email addresses of at least 2 references to job_bioinfo@crs4.it All files should be sent in .pdf format under the subject 'Computational Cardiology'. Contact Information CRS4 (Center for Advanced Studies, Research and Development in Sardinia) Bioinformatics Laboratory Simulation and Modeling Giorgio Fotia / Fabio Maggio http://www.bioinformatica.crs4.org
    • Chair in Complexity Science: ICSS, Strathclyde SMB Digest Vol 8, Issue 8 - February 25, 2008
      Applications are invited for a new Chair in Complexity Science at the University of Strathclyde, UK, based within the Departments of Mathematics and Physics and hosted by the Institute of Complex Systems at Strathclyde (ICSS). The successful applicant will have a multidisciplinary outlook and a strong research record in the broadly defined area of complexity science. Collaborations are already in place in the ICSS among participating groups from a wide base of disciplines (Mathematics, Physics, Biology, Engineering, Chemistry, Computer Science), and the new Professorship will allow us to further develop these collaborations and establish new ones. Further details are available at https://soolin.mis.strath.ac.uk/vacancies/control/vacancyMenu
    • Neuroimaging Assistant/Associate Professor: Yale Child Study Center SMB Digest Vol 8, Issue 8 - February 25, 2008
      Yale University New Faculty Position: Neuroimaging Assistant/Associate Professor The Yale Child Study Center is recruiting for a new faculty position in neuroimaging with a particular emphasis on autism and related conditions. A range of opportunities for collaboration are available including work with leading researchers in the departments of Psychiatry, Psychology, Pediatrics, Neuroimaging, and Neurobiology. There are also opportunities to participate in graduate teaching. The level of the position will be commensurate with the successful applicant's experience. The position includes laboratory space and a generous start-up package. For more information Applicants should submit a letter of interest, curriculum vitae, three letters of reference, and sample publications by March 15, 2008 to: Dr. Fred R Volkmar, Chair of faculty search committee, Yale Child Study Center, P.O. Box 207900, New Haven, CT 06520-7900. Email fred.volkmar@yale.edu electronic submission is encouraged. Yale University is an Affirmative Action-Equal Opportunity Employer and welcomes applications from women and minority candidates. Expiration date of posting: 3/26/2008
    • Lectureship: Biomathematics, Imperial College London SMB Digest Vol 8, Issue 7 - February 18, 2008
      Applications are invited for a Lectureship in Biomathematics within the Department of Mathematics at Imperial College London, starting 1 October 2008 or as soon as possible thereafter. Collaboration be-tween biomedicine and the mathematical sciences is a very high priority throughout the whole of Imperial College London. Within the Department of Mathematics, this has been reflected by the recent appointments of a chair and a lectureship in this field and the establishment of the Biomathematical Sciences research group. Members of this group have a very broad range of research interests, including cellular decision making, gene and protein networks, pattern formation, DNA topology and models of evolution. Many have close links with experimental biologists in the Faculties of Life Sciences and Medicine. Further details can be found at http://www.ma.imperial.ac.uk/ammp/bms/index.php The D